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Home | Molecular Biology | Restriction & Modifying Enzymes | Restriction Enzymes | Conventional

SdaI (SbfI)

5'...C C T G C A↓G G...3'
3'...G G↑A C G T C C...5'
Available as a FastDigest enzyme for rapid DNA digestion

FastDigest enzyme available Unique buffer for 100% activity Optimal incubation at 37°C Star activity Thermal inactivation at 80°C in 20 min Genome qualified Recombinant enzyme LO certified

The SdaI (SbfI) restriction enzyme recognizes CCTGCA^GG sites and cuts best at 37°C in its own unique buffer (Isoschizomers: SbfI, Sse8387I)
  
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Lambda DNA digested with SdaI (SdfI)

Lambda DNA digested with SdaI (SdfI), 0.7% agarose, 5 cleavage sites

Thermo Scientific conventional restriction endonucleases are a large collection of high quality restriction enzymes, optimized to work in one of the buffers of the Five Buffer System. In addition, the universal Tango buffer is provided for convenience in double digestions. All of the enzymes exhibit 100% activity in the recommended buffer and reaction conditions. To ensure consistent performance, Thermo Scientific restriction enzyme reaction buffers contain premixed BSA, which enhances the stability of many enzymes and binds contaminants that may be present in DNA preparations.

Highlights

  • Superior quality – stringent quality control and industry leading manufacturing process
  • Convenient color-coded Five Buffer System
  • Includes universal Tango buffer for double-digestions
  • BSA premixed in reaction buffers
  • Wide selection of restriction endonuclease specificities

Applications

  • Molecular cloning
  • Restriction site mapping
  • Genotyping
  • Southern Blot
  • Restriction fragment length polymorphism (RFLP)
  • SNP

Note

For methylation sensitivity refer to product specifications.

  
Storage Condition-20 C
HazardousNo
Compatible EndsAlw21I, BseSI, Mph1103I, PstI, SduI.
Conditions for 100% Activity
  • 1X Buffer SdaI: 37 mM Tris-acetate (pH 7.0 at 37°C), 15 mM Mg-acetate, 150 mM K-acetate, and 0.1 mg/mL BSA.
  • Incubate at 37°C
Digestion of Agarose-embedded DNAMinimum 5 units of the enzyme are required for complete digestion of 1 µg of agarose-embedded lambda DNA in 16 hours.
Double DigestionPerform double digestion using DoubleDigest.
IsoschizomersSearch for commercial isoschizomers using REsearch.
NoteGreater than 5-fold overdigestion with SdaI may result in star activity.
Storage BufferSdaI is supplied in: 10 mM Tris-HCl (pH 7.5 at 25°C), 100 mM KCl, 1 mM DTT, 0.1 mM EDTA, 0.2 mg/mL BSA, and 50% (v/v) glycerol.

Reaction conditions

Recommended buffer for 100% activity Optimal temperature Enzyme activity in Thermo Scientific buffers, % Tango buffer for double digestion
B (blue)
1X		 G (green)
1X		 O (orange)
1X		 R (red)
1X		 Tango
(yellow)
1X / 2X
SdaI Buffer (Unique) 37°C NR NR 0-20 0-20 NR 20-50 2X

Methylation Effects

  • Dam: never overlaps - no effect.
  • Dcm: never overlaps - no effect.
  • CpG: never overlaps - no effect.
  • EcoKI: never overlaps - no effect.
  • EcoBI: never overlaps - no effect.

Cleavage efficiency close to the termini of PCR fragments

bp from the recognition site to fragment end
1 2 3 4 5
0-20 50-100

Number of recognition sites in DNA molecules

Lambda ΦX174 M13mp18/19 pBR322 puc18/19 pUC57
5 0 1 0 1 0
pTZ19R/U pTZ57R pBluescriptIIKS(±) pBluescriptIISK(±) pACYC177 pACYC184
1 0 0 0 0 0

New sites generated by ligation

Newly generated recognition sites resulting from ligation of protruding compatible DNA ends

Recognition Sequence Second Enzyme Enzymes recognizing newly generated recognition sequence
CCTGCA^GG
  • Alw21I (BsiHKAI)/FastDigest Alw21I* (GTGCA^C)
  • BseSI (Bme1580I)/FastDigest Bme1580I (BseSI)* (GTGCA^C)
  • Mph1103I (NsiI)/FastDigest NsiI (Mph1103I) (ATGCA^T)
  • SduI (Bsp1286I)/FastDigest Bsp1286I (SduI)* (GTGCA^C)
  • HpyCH4V
  • PstI/FastDigest PstI (CTGCA^G)
  • BfmI (SfcI)/FastDigest SfcI (BfmI)
  • HpyCH4V
  • PstI/FastDigest PstI

Newly generated recognition sites resulting from removal of 3'-overhang and self-ligation

Recognition Sequence Newly generated sequence after reaction Restriction enzymes that cleave the newly generated recognition sequence
CCTGCA^GGCCGG
  • HpaII/FastDigest HpaII
  • MspI (HpaII)/FastDigest MspI